miRBase entry: gra-MIR7504d

Stem-loop gra-MIR7504d


Accession
MI0027661
Description
Gossypium raimondii gra-MIR7504d precursor miRNA


Sequence

1389 reads, 218.0 reads per million, 13 experiments
CAAUAGGAGAAUGACAAAUCAuauuuuucuuucugaucuucagcuuuuuccucuucaaaaauuuuaaauucaacaaaaauuuuaaaaaucaggaaaAAAAAUCUGAUUUGUCAUUauucuauua
.(((((((.((((((((((((.((((((.((((((((........................(((((((............))))))))))))))).)))))).)))))))))))).))))))).

Structure
C       G            u      c        cuucagcuuuuuccucuucaaaaa       uucaa 
 AAUAGGA AAUGACAAAUCA auuuuu uuucugau                        uuuuaaa     c
 ||||||| |||||||||||| |||||| ||||||||                        |||||||      
 uuaucuu UUACUGUUUAGU UAAAAA aaggacua                        aaaauuu     a
a       a            C      a        ------------------------       uaaaa 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr8: 43497227-43497350 [+]

Database links

Mature gra-miR7504d-5p

Accession MIMAT0055410
Description Gossypium raimondii gra-miR7504d-5p mature miRNA
Sequence 1 - CAAUAGGAGAAUGACAAAUCA - 21
Evidence experimental
unknown

Mature gra-miR7504d-3p

Accession MIMAT0034066
Description Gossypium raimondii gra-miR7504d-3p mature miRNA
Sequence 97 - AAAAAUCUGAUUUGUCAUU - 115
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629