miRBase entry: gra-MIR8691

Stem-loop gra-MIR8691


Accession
MI0027659
Description
Gossypium raimondii gra-MIR8691 precursor miRNA


Sequence

387 reads, 92.0 reads per million, 11 experiments
ugcuuuuuuuAGAUGAUGAGAAAGGAAAGUCAAGaugaaugaacaaguuugauuuuuauuugauugguuuguuauguucauguuagucugguaaaaagucuuaaacuaggucugaggAUUUAAUCUGUGCUUCUUCUUUGuuggaauuuucuuuuuuuuuauuuggaaauuauu
.....(((((((((((.(((((((((((.((..((((((.((.(.(((((((((((((((.((((((..((.......))..)))))).))))))))...))))))).).)).(((((.............))))))))))).)).))))))))))).))))))))))).....

Structure
ugcuu           U           G  AA      ugaacaaguuugauuuuuauuugauugguuuguuauguucauguuagucugguaaaaagucuuaaacuaggucu     UUUAA 
     uuuuuAGAUGA GAGAAAGGAAA UC  Gaugaa                                                                          gaggA     U
     ||||||||||| ||||||||||| ||  ||||||                                                                          |||||     C
     aaagguuuauu uuuuuucuuuu ag  uuGUUU                                                                          CUUCU     U
uuauu           u           a  -g      --------------------------------------------------------------------------     UCGUG 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr4: 19643915-19644088 [+]

Database links

Mature gra-miR8691-5p

Accession MIMAT0034064
Description Gossypium raimondii gra-miR8691-5p mature miRNA
Sequence 11 - AGAUGAUGAGAAAGGAAAGUCAAG - 34
Evidence experimental
Illumina [1]

Mature gra-miR8691-3p

Accession MIMAT0055408
Description Gossypium raimondii gra-miR8691-3p mature miRNA
Sequence 118 - AUUUAAUCUGUGCUUCUUCUUUG - 140
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629