Stem-loop gra-MIR8686

Accession

MI0027654

Description

Gossypium raimondii gra-MIR8686 precursor miRNA

Sequence

918 reads, 184.0 reads per million, 13 experiments

uacuagggacAGAGAAUGUCAGUACUAGAGGCAGcaaaaucaagaaaaaauagugaggcccuaucaugagcuguaauagcaucuguaaaaacauguauaaauacccgaacacuucuaucaauugcagcucaugauagggccccacuauuuuguauugauuccauugccucuaguacuaacAUUCUCUGUCCCUAGUAC
(((((((((((((((((((.((((((((((((((...((((((...(((((((((.(((((((((((((((((((((.(((..(((....))))))..........(((...))).....))))))))))))))))))))).)))))))))...))))))...)))))))))))))).))))))))))))))))))).

Structure

-                   C              caa      gaa         a                     -----------------------a   uc   a 
 uacuagggacAGAGAAUGU AGUACUAGAGGCAG   aaucaa   aaaauagug ggcccuaucaugagcuguaau                        gca  ugu a
 ||||||||||||||||||| ||||||||||||||   ||||||   ||||||||| |||||||||||||||||||||                        |||  |||  
 AUGAUCCCUGUCUCUUAca ucaugaucuccguu   uuaguu   uuuuaucac ccgggauaguacucgacguua                        ugu  aca a
C                   a              acc      aug         c                     acuaucuucacaagcccauaaaua   --   a 

Annotation confidence Low

Genome context

chr8: 4164151-4164348 [+]

Mature gra-miR8686-5p

• Accession: MIMAT0034059
• Description: Gossypium raimondii gra-miR8686-5p mature miRNA
• Sequence: 11 - AGAGAAUGUCAGUACUAGAGGCAG - 34
• Evidence: experimental ; Illumina [1]

Mature gra-miR8686-3p

• Accession: MIMAT0055403
• Description: Gossypium raimondii gra-miR8686-3p mature miRNA
• Sequence: 181 - AUUCUCUGUCCCUAGUAC - 198
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629