Stem-loop gra-MIR8685

Accession

MI0027653

Description

Gossypium raimondii gra-MIR8685 precursor miRNA

Sequence

457 reads, 81.0 reads per million, 13 experiments

ugacuuucuaucaggaaaaguauuugaagugucauuuguugagcagucaAAUGGAUAUUCGAAUAAAGGUGGUgugucuggggugauuauguucgguuuuaucuuuggguugucucucuacucuaaagagagaucaaagggguuaaaaccgaguauaauaccuuugucugagaGUUCGGUCGAUUGCUCGAUAGACGacacuucaaagauuucucccaagagaguu
.((((((((....(((.((((.(((((((((((.((((((((((((((...(((((.((((.((((((((...............((((((((((((((((((((((....((((((((.......))))))))))))))...)))))))))))))))))))))))).)))).)))))...)))))))))))))).))))))))))).)))).)))..))))))))

Structure

u        auca   a    a           a              aAA     A    A        GGUgugucuggggug                ---      gguu        ac 
 gacuuucu    gga aagu uuugaaguguc uuuguugagcaguc   UGGAU UUCG AUAAAGGU               auuauguucgguuuua   ucuuug    gucucucu  u
 ||||||||    ||| |||| ||||||||||| ||||||||||||||   ||||| |||| ||||||||               ||||||||||||||||   ||||||    ||||||||  c
 uugagaga    ccu uuua aaacuucacaG AGAUAGCUCGUUAG   GCUUG gagu uguuucca               uaauaugagccaaaau   ggaaac    uagagaga  u
-        --ac   c    g           C              CUG     a    c        ---------------                ugg      ----        aa 

Annotation confidence Not enough data

Genome context

chr2: 211480-211705 [-]

Mature gra-miR8685-5p

• Accession: MIMAT0055402
• Description: Gossypium raimondii gra-miR8685-5p mature miRNA
• Sequence: 50 - AAUGGAUAUUCGAAUAAAGGUGGU - 73
• Evidence: experimental ; unknown

Mature gra-miR8685-3p

• Accession: MIMAT0034058
• Description: Gossypium raimondii gra-miR8685-3p mature miRNA
• Sequence: 174 - GUUCGGUCGAUUGCUCGAUAGACG - 197
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629