miRBase entry: gra-MIR7484d

Stem-loop gra-MIR7484d


Accession
MI0027651
Description
Gossypium raimondii gra-MIR7484d precursor miRNA


Sequence

840 reads, 168.0 reads per million, 12 experiments
gucaaaaauuucuuucacuucuauuauaaaaaacugguuugguugacggaauagucauauacCACGUGUACCUCAUGUUAAUGUacaaagacuauuuuuuaacaauagaaauugaugaaauuuuuaauagaAUGACCGGUUUGCUCUUUugaucuaacg
((((((((((((..(((.(((((((.(((((((.(((((((((((((......))))...)))(((((.....)))))..........)))))))))))))..)))))))..))).))))))))........)))).......................

Structure
-----------------------    --------        uu   -c       -a       c      gguugacggaauagucauauacC     U 
                       guca        aaaauuuc  uca  uucuauu  uaaaaaa ugguuu                       ACGUG A
                       ||||        ||||||||  |||  |||||||  ||||||| ||||||                       ||||| C
                       CAGU        uuuuaaag  agu  aagauaa  auuuuuu aucaga                       UGUAC C
gcaaucuaguUUUCUCGUUUGGC    Aagauaau        -u   ua       ca       -      -------------aacaUGUAAU     U 


Annotation confidence Not enough data
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Genome context
chr4: 60907343-60907501 [-]

Database links

Mature gra-miR7484d-5p

Accession MIMAT0055400
Description Gossypium raimondii gra-miR7484d-5p mature miRNA
Sequence 63 - CACGUGUACCUCAUGUUAAUGU - 84
Evidence experimental
unknown

Mature gra-miR7484d-3p

Accession MIMAT0034056
Description Gossypium raimondii gra-miR7484d-3p mature miRNA
Sequence 132 - AUGACCGGUUUGCUCUUU - 149
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629