Stem-loop gra-MIR8679

Accession

MI0027645

Description

Gossypium raimondii gra-MIR8679 precursor miRNA

Sequence

843 reads, 169.0 reads per million, 13 experiments

aaaaggaacacuuguuacaucguuAACCCACUUGUGGAAACUCUACAAGgcuauggaguuuuuuagacuccACAAGCGAGUUAAGGAUGUGACAAguguccuaua
...((((.(((((((((((((.(((((.(.((((((((...((((.((((((....)))))).)))).)))))))).).))))).)))))))))))))))))...

Structure

aaa    a             g     C A        AAC    C      a 
   agga cacuuguuacauc uuAAC C CUUGUGGA   UCUA AAGgcu u
   |||| ||||||||||||| ||||| | ||||||||   |||| ||||||  
   uccu gugAACAGUGUAG AAUUG G GAACAccu   agau uuuuga g
aua    -             G     A C        --c    u      g 

Annotation confidence Low

Genome context

chr1: 47791983-47792087 [+]

Mature gra-miR8679-5p

• Accession: MIMAT0055396
• Description: Gossypium raimondii gra-miR8679-5p mature miRNA
• Sequence: 25 - AACCCACUUGUGGAAACUCUACAAG - 49
• Evidence: experimental ; unknown

Mature gra-miR8679-3p

• Accession: MIMAT0034050
• Description: Gossypium raimondii gra-miR8679-3p mature miRNA
• Sequence: 72 - ACAAGCGAGUUAAGGAUGUGACAA - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629