Stem-loop gra-MIR8678

Accession

MI0027644

Description

Gossypium raimondii gra-MIR8678 precursor miRNA

Sequence

6869 reads, 1342.0 reads per million, 13 experiments

aacuuggauguccuacauggcaauccaaauuaaaauuauuuaauuaaaaacuAUUUUCAUCCCAACAACUGgauauugaaauuggcaguuaaaaccAAUUUGGACUGUCACGUAGGAcuaccguuag
.....((..(((((((.(((((.((((((((.......(((((((.....(((.(((((..(((.....)))....))))).))).)))))))...)))))))).))))).)))))))..)).....

Structure

aacuu  au       a     a        aaaauua       aaaaa   U     --UC   A 
     gg  guccuac uggca uccaaauu       uuuaauu     cuA UUUCA    CCA C
     ||  ||||||| ||||| ||||||||       |||||||     ||| |||||    ||| A
     cc  cAGGAUG ACUGU AGGUUUAA       aaauuga     ggu aaagu    gGU A
gauug  au       C     C        ----cca       ----c   u     uaua   C 

Annotation confidence Low

Genome context

chr1: 52608276-52608402 [-]

Mature gra-miR8678-5p

• Accession: MIMAT0055395
• Description: Gossypium raimondii gra-miR8678-5p mature miRNA
• Sequence: 53 - AUUUUCAUCCCAACAACUG - 71
• Evidence: experimental ; unknown

Mature gra-miR8678-3p

• Accession: MIMAT0034049
• Description: Gossypium raimondii gra-miR8678-3p mature miRNA
• Sequence: 97 - AAUUUGGACUGUCACGUAGGA - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629