Stem-loop gra-MIR8668

Accession

MI0027634

Description

Gossypium raimondii gra-MIR8668 precursor miRNA

Sequence

594 reads, 131.0 reads per million, 12 experiments

uauuguuuCAAUUUAGUCUUGAUUCUacaaaaauuaacccuuaacguuuacacauuguguaauuugguccuuuuuccccuccuauuuugcuuuucuuugugacaaaugaaaguaaaacagcaaaacaaagaccacauugcacauuguguaaauguugaggguuauuaUUUUGGAAUCAAGACUACAUugacacaguu
.(((((.(((((.((((((((((((((.(((...((((((((((((((((((((.((((((((.(((((.(((........((.((((((((((.((((...)))).)))))))))).))......)))))))).)))))))).))))))))))))))))))))...))))))))))))))))).))))).))))).

Structure

u     u     U              c   aau                    u        u     c   uuccccuc  a          c    u 
 auugu uCAAU UAGUCUUGAUUCUa aaa   uaacccuuaacguuuacaca uguguaau ugguc uuu        cu uuuugcuuuu uuug  
 ||||| ||||| |||||||||||||| |||   |||||||||||||||||||| |||||||| ||||| |||        || |||||||||| |||| g
 ugaca aguUA AUCAGAACUAAGGU UUU   auugggaguuguaaaugugu acacguua accag aaa        ga aaaaugaaag aaac  
u     c     C              -   auu                    u        c     -   --caaaac  c          u    a 

Annotation confidence Low

Genome context

chr13: 57945328-57945524 [+]

Mature gra-miR8668-5p

• Accession: MIMAT0055386
• Description: Gossypium raimondii gra-miR8668-5p mature miRNA
• Sequence: 9 - CAAUUUAGUCUUGAUUCU - 26
• Evidence: experimental ; unknown

Mature gra-miR8668-3p

• Accession: MIMAT0034039
• Description: Gossypium raimondii gra-miR8668-3p mature miRNA
• Sequence: 168 - UUUUGGAAUCAAGACUACAU - 187
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629