miRBase entry: gra-MIR8667

Stem-loop gra-MIR8667


Accession
MI0027633
Description
Gossypium raimondii gra-MIR8667 precursor miRNA


Sequence

771 reads, 184.0 reads per million, 11 experiments
uuguacccauUUUCCAAUAGUUUUAUGCCACAUCagcauuuuuaucuugaauuuuagcauauucaaccugaaaaaaaaucaaauccaaauuaaaauccuaaaauucaggaugaaauuacuguuGUGACAUAAAACUAUUGGAAAGAGAuaauau
.......(.((((((((((((((((((.((((.(((...((((((((((((((((((........................................))))))))))))))))))...))).)))).)))))))))))))))))).).......

Structure
uuguacc a                  C    U   cau                  cauauucaaccugaaaaaa 
       c uUUUCCAAUAGUUUUAUG CACA Cag   uuuuaucuugaauuuuag                   a
       | |||||||||||||||||| |||| |||   ||||||||||||||||||                    
       G GAAAGGUUAUCAAAAUAC GUGu guc   aaaguaggacuuaaaauc                   a
uauaauA A                  A    u   auu                  cuaaaauuaaaccuaaacu 


Annotation confidence Medium
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Genome context
chr9: 16980390-16980543 [+]

Database links

Mature gra-miR8667-5p

Accession MIMAT0034038
Description Gossypium raimondii gra-miR8667-5p mature miRNA
Sequence 11 - UUUCCAAUAGUUUUAUGCCACAUC - 34
Evidence experimental
Illumina [1]

Mature gra-miR8667-3p

Accession MIMAT0055385
Description Gossypium raimondii gra-miR8667-3p mature miRNA
Sequence 124 - GUGACAUAAAACUAUUGGAAAGAGA - 148
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629