miRBase entry: gra-MIR8659b

Stem-loop gra-MIR8659b


Accession
MI0027624
Description
Gossypium raimondii gra-MIR8659b precursor miRNA


Sequence

357 reads, 72.0 reads per million, 13 experiments
aggUUUUAGACUCCACAAACAgaguuaaggaauugacaagugucaaaauauuuaaauauauauauuuuaaaaaaaaacacaugucAAUUUUUUAAGGUUGUUUGUGGAAuaagaaaauc
.((((((....(((((((((((..((((((((((((((.((((.......((((((.........)))))).....)))).))))))))))))))..))))))))))).....))))))

Structure
a      -AGAC           ag              a    caaaaua      uau 
 ggUUUU     UCCACAAACAg  uuaaggaauugaca gugu       uuuaaa   a
 ||||||     |||||||||||  |||||||||||||| ||||       ||||||   u
 cuaaaa     AGGUGUUUGUU  AAUUUUUUAAcugu caca       aaauuu   a
-      gaauA           GG              a    --aaaaa      uau 


Annotation confidence Low
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Genome context
chr5: 40491855-40491973 [+]

Database links

Mature gra-miR8659b-5p

Accession MIMAT0055378
Description Gossypium raimondii gra-miR8659b-5p mature miRNA
Sequence 4 - UUUUAGACUCCACAAACA - 21
Evidence experimental
unknown

Mature gra-miR8659b-3p

Accession MIMAT0034029
Description Gossypium raimondii gra-miR8659b-3p mature miRNA
Sequence 86 - AAUUUUUUAAGGUUGUUUGUGGAA - 109
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629