Stem-loop gra-MIR7504c

Accession

MI0027622

Description

Gossypium raimondii gra-MIR7504c precursor miRNA

Sequence

416 reads, 78.0 reads per million, 13 experiments

ucaauagaagaAUGAUAAAUCAGAUUUUUucuucugauuuuuagcuuuuuccuccuaaaaaaaaucaaauccaacuaaaaauacuaaaacucAAGAGAAAAAAUCGGAUUUAUCAUucucuuauug
.((((((.(((((((((((((.(((((((((((.(((.((((((..((((...........................))))..)))))).))).))))))))))).))))))))))))).))))))

Structure

u      a             A           c   u      cu    ccuccuaaaaaa 
 caauag agaAUGAUAAAUC GAUUUUUucuu uga uuuuag  uuuu            a
 |||||| ||||||||||||| ||||||||||| ||| ||||||  ||||            a
 guuauu ucuUACUAUUUAG CUAAAAAAGAG Acu aaaauc  aaaa            u
-      c             G           A   c      au    aucaaccuaaac 

Annotation confidence Low

Genome context

chr3: 35987172-35987297 [+]

Mature gra-miR7504c-5p

• Accession: MIMAT0055376
• Description: Gossypium raimondii gra-miR7504c-5p mature miRNA
• Sequence: 12 - AUGAUAAAUCAGAUUUUU - 29
• Evidence: experimental ; unknown

Mature gra-miR7504c-3p

• Accession: MIMAT0034027
• Description: Gossypium raimondii gra-miR7504c-3p mature miRNA
• Sequence: 93 - AAGAGAAAAAAUCGGAUUUAUCAU - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629