miRBase entry: gra-MIR7502b

Stem-loop gra-MIR7502b


Accession
MI0027608
Description
Gossypium raimondii gra-MIR7502b precursor miRNA


Sequence

580 reads, 97.0 reads per million, 13 experiments
cuaguuauuuUUGUUAAAAGUUUCAUCCAUUuguacuauuaacauuggcuuaacugauaaaauaaucagauaauuauauuuacguauaaaaacuaauuuuuaacaauaaaAAUAGAUGAAAUUUUUAACaaaaugaccga
...((((((((.(((((((((((((((..(((((((...(((...(((.(((.(((((......))))).))))))...))).))))))).....(((((((....))))))).)))))))))))))))))))))))...

Structure
cua        U               CAUUuguacuauuaacauuggcuuaacugauaaaauaaucagauaauuauauuuacguauaaaaacua       a 
   guuauuuU GUUAAAAGUUUCAUC                                                                    auuuuua c
   |||||||| |||||||||||||||                                                                    |||||||  
   caguaaaa CAAUUUUUAAAGUAG                                                                    UAAaaau a
agc        -               -------------------------------------------------------------------A       a 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr1: 614813-614952 [+]

Database links

Mature gra-miR7502b-5p

Accession MIMAT0034013
Description Gossypium raimondii gra-miR7502b-5p mature miRNA
Sequence 11 - UUGUUAAAAGUUUCAUCCAUU - 31
Evidence experimental
Illumina [1]

Mature gra-miR7502b-3p

Accession MIMAT0055370
Description Gossypium raimondii gra-miR7502b-3p mature miRNA
Sequence 111 - AAUAGAUGAAAUUUUUAAC - 129
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629