Stem-loop gra-MIR8653a

Accession

MI0027607

Description

Gossypium raimondii gra-MIR8653a precursor miRNA

Sequence

199318 reads, 34603.0 reads per million, 13 experiments

acaaucguggUAAAUCUACGUAUGGAAAUUCugugacacuggauccgcuauuacacuggccguaaaauaaguuugaauaauuuugagguguuccaaggggaugagauggucucggccuuccauaacaaguauacaucuccuagaguaguagaacauuaguucacgaacaacuaauguucuacuacuccgggagauguauauauguuauggaagguugagaccaucccaucuccuuggaacaccucaaaauuguucaacuuauuuuacggccaguguaauagaggauccaguaUCAGAGAAUUCCCAUACGUACAUUuaccacgauuguc
(((((((((((((((.(((((((((.((((((.(((.(((((((((.((((((((((((((((((((((((((.(((((((((((((((((((((((((((((.(((((((((((((((((((((((.(((((((((((((.(((((((((((((((((((.......))))))))))))))))))).))))))))))))).))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))).))).)))))).))))))))).))))))))))))))).

Structure

-               C         A      g   c         g                          u                             a                       a             a                   ca 
 acaaucguggUAAAU UACGUAUGG AAUUCu uga acuggaucc cuauuacacuggccguaaaauaaguu gaauaauuuugagguguuccaaggggaug gauggucucggccuuccauaaca guauacaucuccu gaguaguagaacauuaguu  c
 ||||||||||||||| ||||||||| |||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||  g
 uguuagcaccauUUA AUGCAUACC UUAAGA ACU ugaccuagg gauaaugugaccggcauuuuauucaa cuuguuaaaacuccacaagguuccucuac cuaccagaguuggaagguauugu uauauguagaggg cucaucaucuuguaaucaa  a
c               C         C      G   a         a                          -                             c                       a             c                   ca 

Annotation confidence Low

Genome context

chr11: 60619123-60619451 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gra-MIR8653a

Mature gra-miR8653a-5p

• Accession: MIMAT0034012
• Description: Gossypium raimondii gra-miR8653a-5p mature miRNA
• Sequence: 11 - UAAAUCUACGUAUGGAAAUUC - 31
• Evidence: experimental ; Illumina [1]

Mature gra-miR8653a-3p

• Accession: MIMAT0055369
• Description: Gossypium raimondii gra-miR8653a-3p mature miRNA
• Sequence: 293 - UCAGAGAAUUCCCAUACGUACAUU - 316
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629