Stem-loop gra-MIR8646

Accession

MI0027599

Description

Gossypium raimondii gra-MIR8646 precursor miRNA

Sequence

1532 reads, 165.0 reads per million, 12 experiments

guauggaaagUAGUGAGGAUGGGAAAUUUGUugauccaaaugauugguuuaggaaauuaaucauuugauuuacAAAUUUUUCAUCUUCACUCGUUuccugcu
(((.(((((..((((((((((((((((((((.((((.(((((((((((((...))))))))))))))))).))))))))))))))))))))..)))))))).

Structure

-   u     gU                    u    c             a 
 gua ggaaa  AGUGAGGAUGGGAAAUUUGU gauc aaaugauugguuu  
 ||| |||||  |||||||||||||||||||| |||| ||||||||||||| g
 cgu ccuUU  UCACUUCUACUUUUUAAAca uuag uuuacuaauuaaa  
u   -     GC                    u    -             g 

Annotation confidence High

Genome context

chr2: 7413256-7413357 [-]

Mature gra-miR8646-5p

• Accession: MIMAT0034004
• Description: Gossypium raimondii gra-miR8646-5p mature miRNA
• Sequence: 11 - UAGUGAGGAUGGGAAAUUUGU - 31
• Evidence: experimental ; Illumina [1]

Mature gra-miR8646-3p

• Accession: MIMAT0055365
• Description: Gossypium raimondii gra-miR8646-3p mature miRNA
• Sequence: 74 - AAAUUUUUCAUCUUCACUCGUU - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629