miRBase entry: gra-MIR8643a

Stem-loop gra-MIR8643a


Accession
MI0027594
Description
Gossypium raimondii gra-MIR8643a precursor miRNA


Sequence

4632 reads, 981.0 reads per million, 13 experiments
augucuuuuaACAUAUUAAGAAGUCGAAUUGacaaugaagaaagaaguaggaagccgaaaagccaucauugccuauaaucaaaacccauaaacccguaccaugauucuuucuucacugccaauuCGACUUCCUGAUAUGUUAAAAGAAau
...(((((((((((((((.((((((((((((.((.((((((((((((((((.....((.......))....)))))............................))))))))))).)).)))))))))))).)))))))))))))))...

Structure
aug               A            a  a           ----------------------------     aagcc  aa 
   ucuuuuaACAUAUUA GAAGUCGAAUUG ca ugaagaaagaa                            guagg     ga  a
   ||||||||||||||| |||||||||||| || |||||||||||                            |||||     ||  g
   AGAAAAUUGUAUAGU CUUCAGCuuaac gu acuucuuucuu                            uaucc     cu  c
uaA               C            c  c           aguaccaugcccaaauacccaaaacuaa     -guua  ac 


Annotation confidence Low
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Genome context
chr2: 23366322-23366471 [-]

Database links

Mature gra-miR8643a-5p

Accession MIMAT0033999
Description Gossypium raimondii gra-miR8643a-5p mature miRNA
Sequence 11 - ACAUAUUAAGAAGUCGAAUUG - 31
Evidence experimental
Illumina [1]

Mature gra-miR8643a-3p

Accession MIMAT0055361
Description Gossypium raimondii gra-miR8643a-3p mature miRNA
Sequence 125 - CGACUUCCUGAUAUGUUAAAAGAA - 148
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629