Stem-loop gra-MIR8636

Accession

MI0027581

Description

Gossypium raimondii gra-MIR8636 precursor miRNA

Sequence

3424 reads, 369.0 reads per million, 13 experiments

ggcugucgacCGGACCCUCUAACAGUGGAGGuguuaugcuaaguggugggccaaaaaugcuaaaaacauuuccuugguggauuaggcgcugcagucaaacucuguaaaccccuuuggguuuuccuuggaguagggagacaaaacacgggucuaaaaccgagcauagacacccgggcacaauaccUCCAUUGUUUGAGGGUCCGAUCAGcugcuc
(((.((.((.(((((((((.(((((((((((((((.((((..(.(((((((.......)))...........((((((...((((((.((((((.......))))).((((....))))((((((((...))))))))........).)))))).))))))......))))).)))).))))))))))))))).))))))))).)).)).))).

Structure

-   u  c  c         U               a    aa u    ggccaaaaaugcuaaaaacauuuc      gga      g ugcagucaaacucuguaaaccccuuugggu        g 
 ggc gu ga CGGACCCUC AACAGUGGAGGuguu ugcu  g ggug                        cuuggu   uuaggc c                              uuuccuug  
 ||| || || ||||||||| ||||||||||||||| ||||  | ||||                        ||||||   |||||| |                              |||||||| a
 ucg cG CU GCCUGGGAG UUGUUACCUccauaa acgg  c ccac                        gagcca   aaucug g                              agagggau  
c   u  A  A         U               c    -g -    ------------------agauac      --a      g ----------------------cacaaaac        g 

Annotation confidence Medium

Genome context

chr9: 70463171-70463384 [+]

Mature gra-miR8636-5p

• Accession: MIMAT0033986
• Description: Gossypium raimondii gra-miR8636-5p mature miRNA
• Sequence: 11 - CGGACCCUCUAACAGUGGAGG - 31
• Evidence: experimental ; Illumina [1]

Mature gra-miR8636-3p

• Accession: MIMAT0055357
• Description: Gossypium raimondii gra-miR8636-3p mature miRNA
• Sequence: 185 - UCCAUUGUUUGAGGGUCCGAUCAG - 208
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629