miRBase entry: gra-MIR8635

Stem-loop gra-MIR8635


Accession
MI0027580
Description
Gossypium raimondii gra-MIR8635 precursor miRNA


Sequence

584 reads, 123.0 reads per million, 13 experiments
gaguucggucUCGGAUCUUCAAACGGUGGAGaaauuuugaccggagugucuaaguucaauuuuaguucuagguugucucuugauucugaggaaagcccaacggguuuacagaguuuggggaguaccucaugacuaaggaaauaugagcauucggccuugcuggaguuugaacccauguuuuuuauauggcauuaguggguaagaacuccacuaaaggcauggguuggaaucuuaucaaggccaaaauuuuuaacauuucuccccaaacuuugugaaucuguuaggcuugagagacaaaacuugaggcuaaaaucaaauauagaugccucgagcacaauacuuccacuguuUGAGGGUCCAAGACUGACcucc
(((.(((((((.(((((((((((((((((((..(((.((..(((.(((((((.(((..(((((((((.(((((((((((((...........(((((.((((((((((((((((((((((((...((((((.(....)...)))))).....(((((((.(((.((((.((((((((((((...........((((((((....)).)))))))))))))))))).)))).))).)))))))................)))))))))))))))))))))))).)))))))))))))..))))).)))))))))..))).))))))).)))..)).)))..))))))))))))))))))).))))))).))).

Structure
-   u       C                   aa   u  ac   a       a   ca         c     --        gauucugagga     c                        uaccucaugacuaaggaaauaugagcauuc       c   a    g            uuauauggcau      -  a 
 gag ucggucU GGAUCUUCAAACGGUGGAG  auu ug  cgg gugucua guu  auuuuaguu uaggu  ugucucuu           aagcc aacggguuuacagaguuuggggag                              ggccuug ugg guuu aacccauguuuu           uagugg gu a
 ||| ||||||| |||||||||||||||||||  ||| ||  ||| ||||||| |||  ||||||||| |||||  ||||||||           ||||| ||||||||||||||||||||||||                              ||||||| ||| |||| ||||||||||||           |||||| ||  
 cuc AGUCAGA CCUGGGAGUuugucaccuu  uaa ac  gcu cguagau uaa  uaaaaucgg guuca  acagagag           uucgg uugucuaaguguuucaaaccccuc                              ccggaac auu uaag uuggguacggaa           aucacc ca g
c   C       A                   ca   c  ga   c       a   ac         a     aa        -----------     a                        --------------uuuacaauuuuuaaaa       u   c    g            -----------      u  a 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
chr11: 1104959-1105330 [+]

Database links

Mature gra-miR8635-5p

Accession MIMAT0033985
Description Gossypium raimondii gra-miR8635-5p mature miRNA
Sequence 11 - UCGGAUCUUCAAACGGUGGAG - 31
Evidence experimental
Illumina [1]

Mature gra-miR8635-3p

Accession MIMAT0055356
Description Gossypium raimondii gra-miR8635-3p mature miRNA
Sequence 351 - UGAGGGUCCAAGACUGAC - 368
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629