Stem-loop gra-MIR167a

Accession

MI0027578

Description

Gossypium raimondii gra-MIR167a precursor miRNA

Literature search

2 open access papers mention gra-MIR167a
(12 sentences)

Sequence

470049 reads, 52516.0 reads per million, 13 experiments

uuugagagguUGAAGCUGCCAGCAUGAUCUGGUgauuaaccuagcuaucacuuuuucuuuuuuccucccuuuuuauguauguuuuuucugccucuuuagugguauauaugcagauugaaagaccaguuuuggauuaaauuucuugaguuaucuucagccugcuugaacuuuauagcuucauagguaugguuucaacaUCAGAUCAUCUUGCAGCUUCAAucacucacu
..((((.((((((((((((.((.(((((((((((...((((((.((((........................................((((........)))).....((((.(((((.((..(.((..(((......)))..)).)..))))))).))))..(((((....)).))))))).)).))))....))))))))))))).)))))))))))).))))..

Structure

uu    a            C  C           -auu    -  g    cacuuuuucuuuuuuccucccuuuuuauguauguuuuuucugccucuuuagugguauauau    a     a  cc g  uu   uu 
  ugag gguUGAAGCUGC AG AUGAUCUGGUg    aacc ua cuau                                                             gcag uugaa ga  a uu  gga  a
  |||| |||||||||||| || |||||||||||    |||| || ||||                                                             |||| ||||| ||  | ||  |||   
  acuc cuAACUUCGACG UC UACUAGACUac    uugg au gaua                                                             cguc gacuu cu  u ag  cuu  a
uc    a            U  -           aacu    u  g    --------------------------------------------cuucgauauuucaaguu    c     -  au g  uu   ua 

Annotation confidence High

Genome context

chr11: 3832157-3832384 [-]

Mature gra-miR167a-5p

• Accession: MIMAT0055354
• Description: Gossypium raimondii gra-miR167a-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUGGU - 33
• Evidence: experimental ; unknown

Mature gra-miR167a-3p

• Accession: MIMAT0033983
• Description: Gossypium raimondii gra-miR167a-3p mature miRNA
• Sequence: 198 - UCAGAUCAUCUUGCAGCUUCAA - 219
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629