Stem-loop gra-MIR3476

Accession

MI0027577

Description

Gossypium raimondii gra-MIR3476 precursor miRNA

Sequence

63503 reads, 15778.0 reads per million, 13 experiments

caguauuccggugucuuggaUCGGACUGGAUUUGUUGACAAaugcauuuuugaagcagauaacaaaucuaaaaaugcuuuuccagucAACAAAUACCAGUUUGAGCUGAGAuugggcugagauuca
((((...(((..(((((((.((((((((((((((((((((((.((((((((.....((((.....)))))))))))).)))...)))))))))).))))))))).)))))))))))))).......

Structure

-------    auu   gu       a         -          ---   u        gaagc    a 
       cagu   ccg  gucuugg UCGGACUGG AUUUGUUGAC   AAa gcauuuuu     agau a
       ||||   |||  ||||||| ||||||||| ||||||||||   ||| ||||||||     |||| c
       gucg   ggu  uAGAGUC AGUUUGACC UAAACAAcug   uuu cguaaaaa     ucua a
acuuaga    ---   --       G         A          acc   u        -----    a 

Annotation confidence Medium

Genome context

chr3: 44555138-44555263 [-]

Mature gra-miR3476-5p

• Accession: MIMAT0033982
• Description: Gossypium raimondii gra-miR3476-5p mature miRNA
• Sequence: 21 - UCGGACUGGAUUUGUUGACAA - 41
• Evidence: experimental ; Illumina [1]

Mature gra-miR3476-3p

• Accession: MIMAT0055353
• Description: Gossypium raimondii gra-miR3476-3p mature miRNA
• Sequence: 88 - AACAAAUACCAGUUUGAGCUGAGA - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629