Stem-loop gra-MIR8633

Accession

MI0027574

Description

Gossypium raimondii gra-MIR8633 precursor miRNA

Sequence

1527 reads, 416.0 reads per million, 12 experiments

gaaggacaacUAAGUGAAGAAAGAGGUAGGUUugaagaagaagaugguaagcugaguuuaagaggaauggugaacuuaauugagaucaucuucuccuaguuuucgucacaugaaccuuucuucauuuagaucuucaaacCAGCCUUUUCUUCACUUAGUuguccuucc
(((((((((((((((((((((.(((((.((((((((((.(((((.(((....(((.......((((..(((((.(((....))).)))))...))))........))).....)))..))))).......)))))))))).)))))))))))))))))))))))))).

Structure

-                     A     A          ------a     -u   -aagc   -guuuaag    -au     a   a 
 gaaggacaacUAAGUGAAGAA GAGGU GGUUugaaga       gaaga  ggu     uga        agga   gguga cuu a
 ||||||||||||||||||||| ||||| ||||||||||       |||||  |||     |||        ||||   ||||| |||  
 cuuccuguUGAUUCACUUCUU UUCCG Ccaaacuucu       cuucu  cca     acu        uccu   cuacu gag u
c                     -     A          agauuua     uu   aguac   gcuuuuga    cuu     a   u 

Annotation confidence High

Genome context

chr10: 6475834-6476001 [-]

Mature gra-miR8633-5p

• Accession: MIMAT0033979
• Description: Gossypium raimondii gra-miR8633-5p mature miRNA
• Sequence: 11 - UAAGUGAAGAAAGAGGUAGGUU - 32
• Evidence: experimental ; Illumina [1]

Mature gra-miR8633-3p

• Accession: MIMAT0055351
• Description: Gossypium raimondii gra-miR8633-3p mature miRNA
• Sequence: 140 - CAGCCUUUUCUUCACUUAGU - 159
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629