miRBase entry: atr-MIR398

Stem-loop atr-MIR398


Accession
MI0027542
Description
Amborella trichopoda atr-MIR398 precursor miRNA


Sequence

20795 reads, 50583 reads per million, 4 experiments
agcccaaauucgaagaagcaucagaauggggaagucucaacaggagcgauaugagaacacacaaucauaugcauaaauauuguguaugugugugugcacgugugcaugugcaugugcgugcuugUGUGUUCCCAGGUCGCCCCUGccgagccugcccauaucuauaaauaauucuucuugcugcu
(((.(((....((((((.....((((((((.(.(.(((..((((.(((((.((.((((((((((.(((((((((((...))))))))))).((((((((((((......)))))))))))))))))))))).)).))))).))))..)))).).))))).)))........)))))))))..)))

Structure
   -c   auuc      ---gcauc   -     g a u   aa    a     a  a          ucauaugcauaaauauuguguaugugu            gc 
agc  caa    gaagaa        aga auggg a g cuc  cagg gcgau ug gaacacacaa                           gugugcacgugu  a
|||  |||    ||||||        ||| ||||| | | |||  |||| ||||| || ||||||||||                           ||||||||||||   
ucg  guu    cuucuu        ucu uaccc u c gag  GUCC CGCUG AC CUUGUGUguu                           cgugcguguacg  u
   uc   ----      aauaaaua   a     g c -   cc    C     G  C          ---------------------------            ug 


Annotation confidence High
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Genome context
scaffold00102: 1169815-1169999 [+]

Database links

Mature atr-miR398

Accession MIMAT0033945
Description Amborella trichopoda atr-miR398 mature miRNA
Sequence 125 - UGUGUUCCCAGGUCGCCCCUG - 145
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089