miRBase entry: atr-MIR397b

Stem-loop atr-MIR397b


Accession
MI0027541
Description
Amborella trichopoda atr-MIR397b precursor miRNA


Sequence

1327 reads, 1655 reads per million, 4 experiments
gaggaaaaccagaaacaUCAUUGAGUGCAGCGUUGGUGaaccccaaaaccuaauuuucaucucucuuguuuggguuucggcagcgcugcacccaauuaugccuuugguauauccuc
(((((..((((((..(((.((((.(((((((((((.((((.((((((.....................)))))).)))).))))))))))).)))).)))..))))))...)))))

Structure
     -aa      aa   C    A           G    c      accuaauuu 
gagga   accaga  caU AUUG GUGCAGCGUUG UGaa cccaaa         u
|||||   ||||||  ||| |||| ||||||||||| |||| ||||||         c
cuccu   ugguuu  gua uaac cacgucgcgac gcuu ggguuu         a
     aua      cc   u    c           g    u      guucucucu 


Annotation confidence Not enough data
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Genome context
scaffold00072: 1231145-1231260 [+]

Database links

Mature atr-miR397b

Accession MIMAT0033944
Description Amborella trichopoda atr-miR397b mature miRNA
Sequence 18 - UCAUUGAGUGCAGCGUUGGUG - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089