miRBase entry: atr-MIR319d

Stem-loop atr-MIR319d


Accession
MI0027529
Description
Amborella trichopoda atr-MIR319d precursor miRNA


Sequence

3047 reads, 1692 reads per million, 2 experiments
gagucuucaaguaaaaaggaaaaaugcaaaaaugggagcuccuuugaggacaaagaaagcacuuuggaucgucuuuuugcucauugaagagucauccUUUGGACUGAAGGGAGCUCCUaauucuucucuuuuuauccucacccuc
(((.......(((((((((((.(((.......(((((((((((((.((..(((((((((.((........))))))..((((......))))....)))))..)).)))))))))))))))).))).)))))))).......)))

Structure
   ucuucaa        -   a   gcaaaaa             g  ga     --------------------    c  uuu 
gag       guaaaaag gaa aau       ugggagcuccuuu ag  caaag                    aaag ac   g
|||       |||||||| ||| |||       ||||||||||||| ||  |||||                    |||| ||    
cuc       uauuuuuc cuu uua       aUCCUCGAGGGAA UC  GUUUc                    uuuc ug   g
   ccacucc        u   c   -------             G  AG     cuacugagaaguuacucguu    -  cua 


Annotation confidence Not enough data
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Genome context
scaffold00188: 77604-77748 [-]

Database links

Mature atr-miR319d

Accession MIMAT0033931
Description Amborella trichopoda atr-miR319d mature miRNA
Sequence 98 - UUUGGACUGAAGGGAGCUCCU - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089