miRBase entry: atr-MIR169a

Stem-loop atr-MIR169a


Accession
MI0027519
Description
Amborella trichopoda atr-MIR169a precursor miRNA


Sequence

79 reads, 127 reads per million, 3 experiments
gguauaacaugaagagacaguguuauuuugaUAGCCAAGGAUGACUUGCCUacauccacaauguggaugguucuagggugcuauggccccaauuaagacccucauuaugagguuucuaggcggucuccuuggcuaaccugacugacccugucuucuaugcuagacc
(((.((.((((..(((((((.((((.((.(.((((((((((.((((.((((((((((((...)))))))......(((.((....))))).........(((((...)))))....))))))))))))))))))).)..)).)))).))))))).)))).)).)))

Structure
   a  a    aa       u    u  -u a          U    U     -----------------------------------------------       a 
ggu ua caug  gagacag guua uu  g UAGCCAAGGA GACU GCCUa                                               cauccac  
||| || ||||  ||||||| |||| ||  | |||||||||| |||| |||||                                               ||||||| a
cca au guau  uucuguc cagu ag  c aucgguuccu cugg cggau                                               guaggug  
   g  c    -c       c    c  uc a          -    -     cuuuggaguauuacucccagaauuaaccccgguaucgugggaucuug       u 


Annotation confidence High
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Genome context
scaffold00016: 2808583-2808748 [-]

Database links

Mature atr-miR169a

Accession MIMAT0033921
Description Amborella trichopoda atr-miR169a mature miRNA
Sequence 32 - UAGCCAAGGAUGACUUGCCU - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089