Stem-loop atr-MIR169a

Accession

MI0027519

Description

Amborella trichopoda atr-MIR169a precursor miRNA

Sequence

79 reads, 55 reads per million, 3 experiments

gguauaacaugaagagacaguguuauuuugaUAGCCAAGGAUGACUUGCCUacauccacaauguggaugguucuagggugcuauggccccaauuaagacccucauuaugagguuucuaggcggucuccuuggcuaaccugacugacccugucuucuaugcuagacc
(((.((.((((..(((((((.((((.((.(.((((((((((.((((.((((((((((((...)))))))......(((.((....))))).........(((((...)))))....))))))))))))))))))).)..)).)))).))))))).)))).)).)))

Structure

   a  a    aa       u    u  -u a          U    U     -----------------------------------------------       a 
ggu ua caug  gagacag guua uu  g UAGCCAAGGA GACU GCCUa                                               cauccac  
||| || ||||  ||||||| |||| ||  | |||||||||| |||| |||||                                               ||||||| a
cca au guau  uucuguc cagu ag  c aucgguuccu cugg cggau                                               guaggug  
   g  c    -c       c    c  uc a          -    -     cuuuggaguauuacucccagaauuaaccccgguaucgugggaucuug       u 

Annotation confidence High

Genome context

scaffold00016: 2808583-2808748 [-]

Mature atr-miR169a

• Accession: MIMAT0033921
• Description: Amborella trichopoda atr-miR169a mature miRNA
• Sequence: 32 - UAGCCAAGGAUGACUUGCCU - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089