Stem-loop atr-MIR164b

Accession

MI0027512

Description

Amborella trichopoda atr-MIR164b precursor miRNA

Sequence

1702 reads, 2130.0 reads per million, 2 experiments

ggugagugcaagagcccgugcggguggaugaaccccuguUGGAGAAGCAGGGCACGUGCAaacacacgugcuguccucuuugCACGUGCUCCCCUUCUCCAACauggguuucacaccucucucucucucuacu
((((((.(..((((.......(((((...((((((.(((((((((((..(((((((((((((...((.....))....)))))))))))))..))))))))))).))))))..)))))))))..).))).)))

Structure

   -   u ca    cccgugc     gau      c           CA             -cac  g 
ggu gag g  agag       gggug   gaaccc uguUGGAGAAG  GGGCACGUGCAaa    ac u
||| ||| |  ||||       |||||   |||||| |||||||||||  |||||||||||||    || g
uca cuc c  ucuc       uccac   uuuggg aCAACCUCUUC  CUCGUGCACguuu    ug c
   u   u uc    -------     -ac      u           CC             cucc  u 

Annotation confidence High

Genome context

scaffold00045: 3520956-3521088 [-]

Mature atr-miR164b-5p

• Accession: MIMAT0033914
• Description: Amborella trichopoda atr-miR164b-5p mature miRNA
• Sequence: 40 - UGGAGAAGCAGGGCACGUGCA - 60
• Evidence: experimental ; Illumina [1]

Mature atr-miR164b-3p

• Accession: MIMAT0061207
• Description: Amborella trichopoda atr-miR164b-3p mature miRNA
• Sequence: 83 - CACGUGCUCCCCUUCUCCAAC - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089