miRBase entry: atr-MIR164a

Stem-loop atr-MIR164a


Accession
MI0027511
Description
Amborella trichopoda atr-MIR164a precursor miRNA


Sequence

2657 reads, 18251 reads per million, 4 experiments
gcucgaUGGAGAAGCAGGGCACGUGCAuuacaaauccaucuuccuuugaagaugaagaaaaagaagaaaaguagugaaauguaagggugguuuugugguucaugugccuaucuucuccaucaugc
((..((((((((((..(((((((((.((((((((.(((((((.........................................))))))).)))))))).)))))))))..))))))))))..))

Structure
  uc          CA         C        u       ccuuugaagaugaagaaaa 
gc  gaUGGAGAAG  GGGCACGUG Auuacaaa ccaucuu                   a
||  ||||||||||  ||||||||| |||||||| |||||||                   g
cg  cuaccucuuc  uccguguac ugguguuu gguggga                   a
  ua          ua         u        u       auguaaagugaugaaaaga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold00007: 3789229-3789353 [+]

Database links

Mature atr-miR164a

Accession MIMAT0033913
Description Amborella trichopoda atr-miR164a mature miRNA
Sequence 7 - UGGAGAAGCAGGGCACGUGCA - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089