miRBase entry: atr-MIR159

Stem-loop atr-MIR159


Accession
MI0027509
Description
Amborella trichopoda atr-MIR159 precursor miRNA


Sequence

107964 reads, 56183 reads per million, 4 experiments
uucuaugaguuguuuagauuguuggguuguguguauuuuuguaggguuguugacauggagcuccuugagguccaauccagguucuuacuuagguaaaagcagcugcuaguucauggaucccacuguguuauuuccaaauauaagagaauggagauauaauggugguuugcaugaccaaggagcugcauucuugccuugugagauuccuugUUUGGAUUGAAGGGAGCUCUAuguguucuccccuuccaagcuuauuuucucucucauuuauuuagcccuugaucuuuucauuuuuugaa
.((...(((.((...((((((..((((((.(((((..((((.((((..(...((((((((((((((..(((((((.(.(((.((((((..((((((((((((((.((.(.(((((.(..(((((((..((((((((............))))))))..)))))))..).))))).).)).)))))).)).)))))).))))))..))).).)))))))..))))))))))))))...)..))))..))))..)))..............)).)))))).))))))...)).)))..)).

Structure
u  uau   u  uuu      uu      u  --------------   uu    -u    uu uug              ga       u c   -u      uu      -  -      g  a u     g uc       gu        aauau 
 uc   gag ug   agauug  ggguug gu              gua  uuug  aggg  g   acauggagcuccuu  gguccaa c agg  ucuuac  agguaa aa gcagcu cu g ucaug a  ccacugu  uauuucca     a
 ||   ||| ||   ||||||  |||||| ||              |||  ||||  ||||  |   ||||||||||||||  ||||||| | |||  ||||||  |||||| || |||||| || | ||||| |  |||||||  ||||||||      
 ag   uuu ac   ucuagu  cccgau ua              uau  gaac  uccc  c   uguAUCUCGAGGGA  UUAGGUU g ucc  agagug  uccguu uu cgucga ga c aguac u  gguggua  auagaggu     a
a  -uu   u  uuu      -u      u  uuuacucucucuuu   uc    cu    cu uug              AG       U u   uu      -u      c  a      g  a c     g uu       au        aagag 


Annotation confidence Not enough data
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Genome context
scaffold00105: 1236832-1237130 [-]

Database links

Mature atr-miR159

Accession MIMAT0033911
Description Amborella trichopoda atr-miR159 mature miRNA
Sequence 211 - UUUGGAUUGAAGGGAGCUCUA - 231
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089