miRBase entry: atr-MIR156d

Stem-loop atr-MIR156d


Accession
MI0027508
Description
Amborella trichopoda atr-MIR156d precursor miRNA


Sequence

315 reads, 1154 reads per million, 4 experiments
agagccuuugaagcuuucucucucuaacaauuugcgguaagaaaggggguaguggguuaugcUGACAGAAGAGAGUGAGCACacauggccaauuguauaaccguaugccgcugucugugcgugcucacuccucuucuugucagcuuuaucauuucccgcuauugcuuugugccaugaccuccugcauucuccguucu
.((((.......)))).................((((..(((((((((((((((((..((((((((((((((((((((((((.(((((.((...(((((....)))))...)).))))).))))))))).)))))).)))))))......))..))))))...((.....))....)))))))...))))))))...

Structure
agagccuuugaagcuuucucucucuaacaauuu    ua    ---       ----------------      uu  ------       -      -         a     c  auu     a 
                                 gcgg  agaa   agggggu                aguggg  au      gcUGACA GAAGAG AGUGAGCAC caugg ca   guaua c
                                 ||||  ||||   |||||||                ||||||  ||      ||||||| |||||| ||||||||| ||||| ||   |||||  
                                 ugcc  ucuu   uccucca                ucgccc  ua      cgacugu cuucuc ucacucgug guguc gu   cguau c
------------------------------ucu    --    acg       guaccguguuucguua      uu  cuauuu       u      c         c     u  cgc     g 


Annotation confidence Not enough data
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Genome context
scaffold00065: 3401522-3401718 [-]

Database links

Mature atr-miR156d

Accession MIMAT0033910
Description Amborella trichopoda atr-miR156d mature miRNA
Sequence 63 - UGACAGAAGAGAGUGAGCAC - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089