miRBase entry: atr-MIR8610

Stem-loop atr-MIR8610


Accession
MI0027500
Description
Amborella trichopoda atr-MIR8610 precursor miRNA


Sequence

291 reads, 357 reads per million, 4 experiments
uugaucauucccucucuccuacccaauguugugagauuucgcuucagaACCUUCUUCGGUUUGUUCAGAAAAauuaagcgcuucaguacuucuuccgauucugaggaagacuucggauuuauauuaaguuaaaaaaaaaaaaucugaagucucuccccuaaucugccaaauuaccgaagugcuucauuuUUCUGACCAAAUUGAAGGAGGuucugaaacgaaucuaacaauauuggucaaagcaacauaaccgaugucaa
.(((.((((.............((((((((((.(((((.((.(((((((((((((((((((((.((((((((((.(((((((((.(((........((((..(.((((((((((((((((...................))))))))))))).))))..))))........))).))))))))).)))))))))).))))))))))))))))))))).))))))).))))))))))................))))))).

Structure
u   u    ---cccucucuccuac          g     u  c                     U          u         a   cuucuucc    cu a   -             auauuaag 
 uga cauu                ccaauguugu agauu cg uucagaACCUUCUUCGGUUUG UCAGAAAAau aagcgcuuc gua        gauu  g gga agacuucggauuu        u
 ||| ||||                |||||||||| ||||| || ||||||||||||||||||||| |||||||||| ||||||||| |||        ||||  | ||| |||||||||||||        u
 acu guag                gguuauaaca ucuaa gc aagucuuGGAGGAAGUUAAAC AGUCUUuuua uucgugaag cau        cuaa  c ccu ucugaagucuaaa        a
a   -    ccaauacaacgaaacu          a     -  a                     C          c         c   uaaaccgu    uc -   c             aaaaaaaa 


Annotation confidence High
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Genome context
scaffold00210: 197058-197317 [+]

Database links

Mature atr-miR8610.1

Accession MIMAT0033901
Description Amborella trichopoda atr-miR8610.1 mature miRNA
Sequence 49 - ACCUUCUUCGGUUUGUUCAGAAAA - 72
Evidence experimental
Illumina [1]

Mature atr-miR8610.2

Accession MIMAT0033902
Description Amborella trichopoda atr-miR8610.2 mature miRNA
Sequence 190 - UUCUGACCAAAUUGAAGGAGG - 210
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089