Stem-loop atr-MIR8609

Accession

MI0027499

Description

Amborella trichopoda atr-MIR8609 precursor miRNA

Sequence

957 reads, 1657 reads per million, 4 experiments

ugagaaaauauauauggacuuauggccucauuaaggauaugaccuuuaauagagcagaauggaaaACUAAGAUCCGUGUAGCUAAUCUCaauuaguugggaaaaggcuuugaugauacauaugaaauuuuaaccauuggauguaaaaucuaaaggauugaaguguaucacaaucaucaucaucaucauuuuagcuuuuuuccaauuaauugggguuggcuacaugaaucuugguucuucauucugcucuauuaaaggccauauccuuagugaagccauaaguccccauauuuuuuca
(((((((((((....(((((((((((.((((((((((((((.(((((((((((((((((((((.(((((((((.((((((((((((((((((((((((((((((((((.(((((((.....(((.(((((((((.((((((.....)))))).)).)))))))...))).....)))))))..........)))))))))))))))))))))))))))))))))).))))))))).))))))))))))))))))))).)))))))))))))).)))))))))))..)))))))))))

Structure

           auau           c              a                     a         C                                  ---------u       acaua   --a       -  a      g 
ugagaaaauau    ggacuuauggc ucauuaaggauaug ccuuuaauagagcagaaugga aACUAAGAU CGUGUAGCUAAUCUCaauuaguugggaaaaggcu          ugaugau     uga   auuuuaa cc uuggau u
|||||||||||    ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||          |||||||     |||   ||||||| || |||||| a
acuuuuuuaua    ccugaauaccg agugauuccuauac ggaaauuaucucgucuuacuu uugguucua guacaucgguugggguuaauuaaccuuuuuucga          acuacua     acu   ugaaguu gg aaucua a
           --cc           a              c                     c         a                                  uuuuacuacu       cuaac   aug       a  a      a 

Annotation confidence Low

Genome context

scaffold00175: 147724-148020 [+]

Mature atr-miR8609

• Accession: MIMAT0033900
• Description: Amborella trichopoda atr-miR8609 mature miRNA
• Sequence: 66 - ACUAAGAUCCGUGUAGCUAAUCUC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089