miRBase entry: atr-MIR8609

Stem-loop atr-MIR8609


Accession
MI0027499
Description
Amborella trichopoda atr-MIR8609 precursor miRNA


Sequence

957 reads, 1657 reads per million, 4 experiments
ugagaaaauauauauggacuuauggccucauuaaggauaugaccuuuaauagagcagaauggaaaACUAAGAUCCGUGUAGCUAAUCUCaauuaguugggaaaaggcuuugaugauacauaugaaauuuuaaccauuggauguaaaaucuaaaggauugaaguguaucacaaucaucaucaucaucauuuuagcuuuuuuccaauuaauugggguuggcuacaugaaucuugguucuucauucugcucuauuaaaggccauauccuuagugaagccauaaguccccauauuuuuuca
(((((((((((....(((((((((((.((((((((((((((.(((((((((((((((((((((.(((((((((.((((((((((((((((((((((((((((((((((.(((((((.....(((.(((((((((.((((((.....)))))).)).)))))))...))).....)))))))..........)))))))))))))))))))))))))))))))))).))))))))).))))))))))))))))))))).)))))))))))))).)))))))))))..)))))))))))

Structure
           auau           c              a                     a         C                                  ---------u       acaua   --a       -  a      g 
ugagaaaauau    ggacuuauggc ucauuaaggauaug ccuuuaauagagcagaaugga aACUAAGAU CGUGUAGCUAAUCUCaauuaguugggaaaaggcu          ugaugau     uga   auuuuaa cc uuggau u
|||||||||||    ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||          |||||||     |||   ||||||| || |||||| a
acuuuuuuaua    ccugaauaccg agugauuccuauac ggaaauuaucucgucuuacuu uugguucua guacaucgguugggguuaauuaaccuuuuuucga          acuacua     acu   ugaaguu gg aaucua a
           --cc           a              c                     c         a                                  uuuuacuacu       cuaac   aug       a  a      a 


Annotation confidence Low
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Genome context
scaffold00175: 147724-148020 [+]

Database links

Mature atr-miR8609

Accession MIMAT0033900
Description Amborella trichopoda atr-miR8609 mature miRNA
Sequence 66 - ACUAAGAUCCGUGUAGCUAAUCUC - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089