Stem-loop atr-MIR8590

Accession

MI0027478

Description

Amborella trichopoda atr-MIR8590 precursor miRNA

Sequence

2410 reads, 1681 reads per million, 4 experiments

cuacccucaucacuguucaaaguucaucgcacggucacgacugucugguaguauuauuuuucauuuuuuuuuucuacaaaucggaaugaccugaaauuugaaguauguauacaucuuagugaggcacaucuaauaaaaauauauagcaaaauaauucgugaaaaguaauugaccaaaacuuuggucaauuuuuuucauguaaaauauuuuuuugauauuuuuuauagauucgucuauuuuuuacgaauacacauucuaaauuucagguuAUUCCGAUUUGUAGAAAAAAAAAUgaaaagugaaacacuaucggauaaucgugacaguacgaucaacuauggauggugaugagaguag
((((.((((((((((((((.((((.((((.((.(((((((.(((((((((((.(((((((((((((((((((.(((((((((((((((((((((((((((.(((.(((((...........((((..(((((..((((((((.(((.((((((...(((((((((.((((((((((....))))))))))))))))))).....)))))).)))))))))))..)))))..))))...........))))).))).))))))))))))))))))))))))))))))))))))))))))))))...))))))))))).))))))).)).)))).)))).)))))))))))))).))))

Structure

    c              a    c    c  g       c           --a                   u                           a   a     acaucuuagug    ac     au        a   c      --auu         u          a 
cuac cucaucacuguuca aguu aucg ac gucacga ugucugguagu   uuauuuuucauuuuuuuuu cuacaaaucggaaugaccugaaauuug agu uguau           aggc  aucua  aaaaauau uag aaaaua     cgugaaaag aauugaccaa a
|||| |||||||||||||| |||| |||| || ||||||| |||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||           ||||  |||||  |||||||| ||| ||||||     ||||||||| ||||||||||  
gaug gaguagugguaggu ucaa uagc ug cagugcu auaggcuauca   agugaaaagUAAAAAAAAA GAUGUUUAGCCUUAuuggacuuuaaau uua acaua           ucug  uagau  uuuuuaua guu uuuuau     guacuuuuu uuaacugguu c
    a              a    c    a  a       a           caa                   -                           c   c     agcauuuuuua    cu     au        -   u      aaaau         -          u 

Annotation confidence Low

Genome context

scaffold00055: 4302007-4302363 [+]

Mature atr-miR8590

• Accession: MIMAT0033877
• Description: Amborella trichopoda atr-miR8590 mature miRNA
• Sequence: 270 - AUUCCGAUUUGUAGAAAAAAAAAU - 293
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089