miRBase entry: atr-MIR8588

Stem-loop atr-MIR8588


Accession
MI0027476
Description
Amborella trichopoda atr-MIR8588 precursor miRNA


Sequence

3554 reads, 2298 reads per million, 3 experiments
uuacuccaggaaacgaaggguuacuggaauuuugaugggaagagaugaaaaacaCCGAGCUCCCAGGGUUAAUGGcggucucgugagacuaggggucacagagauuaggcuuuaccagaacaacugagaacucaaaagauaagauuaaucuacaucgccugaucucugcgaccacuuccauuaauccugggaguuugguguuuuucaucucuucccaauaaaaguccaacauugguaucggaguga
(((((((..((.((.((..((...((((.(((((.((((((((((((((((((((((((((((((((((((((((.(((((....)))))(((((((.((((((((((((.....(((.....)))..........((((.......)))).....)))))))))))).)))).))))))))))))))))))))))))))))))))))))))))))).))))).)))))).)).)).)))))))))

Structure
       ag  a  g  gg  uac    a     a                                        cggucucgugagacu   -    a            uuuaccagaacaacugagaacu 
uuacucc  ga ac aa  gu   ugga uuuug ugggaagagaugaaaaacaCCGAGCUCCCAGGGUUAAUGG               agg gguc cagagauuaggc                      c
|||||||  || || ||  ||   |||| ||||| ||||||||||||||||||||||||||||||||||||||||               ||| |||| ||||||||||||                       
agugagg  cu ug uu  ca   accu aaaau acccuucucuacuuuuugugguuugaggguccuaauuacc               uuc ccag gucucuaguccg                      a
       --  a  g  -a  ---    g     a                                        ---------------   a    c            cuacaucuaauuagaauagaaa 


Annotation confidence Not enough data
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Genome context
scaffold00004: 6062147-6062392 [+]

Database links

Mature atr-miR8588

Accession MIMAT0033875
Description Amborella trichopoda atr-miR8588 mature miRNA
Sequence 55 - CCGAGCUCCCAGGGUUAAUGG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089