miRBase entry: atr-MIR8552d

Stem-loop atr-MIR8552d


Accession
MI0027471
Description
Amborella trichopoda atr-MIR8552d precursor miRNA


Sequence

807 reads, 3836 reads per million, 4 experiments
auauauauauacauauaugggaaaagaugggauuagcccacuagcucguaugaacauaugagcccaauggcccagauugaaucuaggccgaucugaagaucacggaugucugguagugcuugaauuguaguuuuuuuucuacagauccaaaucacuugaaaguuuaggugugcguucuucucaucaaggcgcaccuaauaaaaaaauaaaaaaaauuaucugcaaaaaauaaaaugacuaaaauacccccugaaacuuuucggggguauuuggucaauuuauuucauguaaaauauuuguuugauauuuuucgaagauucaccuauuuuugaugaauacacgccuaaaauuucaagugauuuggauuuguggaaaauucaaacacuaccgaacaUCCGUGAUCGUUAGAUCGGCCCAGaauuaaucuaggacguugagcucauauguucauaugagcuaguggacuaaucccaucuuuucccuauauauauauauauau
(((((((((((.(((((.((((((((((((((((((.((((((((((((((((((((((((((.(((((.((.(((((((.(((.(((((((((((.((((((((((((.((((((((.(((((((..........(((((((((((((((((((((((((.((((((((((.((((.........(((....)))........................((((..(((((((.((((((((.(((((((.(((....)))))))))))))))))).)))))))..))))(((((((.....))))))).((((((((......)))))))).)))).)))))))))).)))))))))))))))))))))))))))))))).)))))))).)))))))))))).))))))))))).))).))))))).)).))))).)))))))))))))))))))))))))).))))))))))))))))))))))).)))))))))))

Structure
           c     u                  c                          c     g  c       a   a           a            c        c       guaguuuuuu                         g          c    uucucaucaaggcgcaccuaauaaaaaaauaaaaaaaauuauc    aa       a        a       u   a 
auauauauaua auaua gggaaaagaugggauuag ccacuagcucguaugaacauaugagc caaug cc agauuga ucu ggccgaucuga gaucacggaugu ugguagug uugaauu          uucuacagauccaaaucacuugaaa uuuaggugug guuc                                           ugca  aaauaaa ugacuaaa uaccccc gaa c
||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||| ||| ||||||||||| |||||||||||| |||||||| |||||||          ||||||||||||||||||||||||| |||||||||| ||||                                           ||||  ||||||| |||||||| ||||||| |||  
uauauauauau uauau cccuuuucuacccuaauc ggugaucgaguauacuuguauacucg guugc gg ucuaauu aGA CCGGCUAGAUU CUAGUGCCUaca gccaucac aacuuaa          aagguguuuagguuuagugaacuuu aaauccgcac uaag                                           augu  uuuauuu acugguuu auggggg cuu u
           a     -                  a                          a     a  a       a   C           G            a        a       ----------                         a          a    uaguuuuuauccacuuagaagcuuuuuauaguuuguuuauaaa    ac       a        -       -   u 


Annotation confidence Not enough data
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Genome context
scaffold00042: 1550291-1550789 [+]

Database links

Mature atr-miR8552d

Accession MIMAT0033870
Description Amborella trichopoda atr-miR8552d mature miRNA
Sequence 395 - UCCGUGAUCGUUAGAUCGGCCCAG - 418
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089