miRBase entry: atr-MIR8552b

Stem-loop atr-MIR8552b


Accession
MI0027456
Description
Amborella trichopoda atr-MIR8552b precursor miRNA


Sequence

3986 reads, 5152 reads per million, 4 experiments
uauauauauauaugaaaaaaaaugguauuaguccacuagcuuauaugaacauaugagcccaacggucuauauugaaucugggccaaucugacgaucacggauguccgguagugcuugaauuuuauuuuaauuucuacaaauucaaaucacuugaaauuuuagauguauguucuucuaaucaaggcacaccuaauaaaaauauuaaaaaauacuauucgugaaaaacaaaauaaccaaaauacccccuaaauuuggggguauuuuggccaauuuauuucauguaaaauauuuuuugauauuuuuugaagauucaccuauuuuugauaaacacacgcuuaaaauuucaagugauuuggauuuuuagaaaaauaaaauaaaauucaaacacUACCGGACAUCUGUGAUCGUCAGAucgacccagguucaaucuaggccguugggcucauagguucauaugagcuaaugggcuaaucucagauuuuuccauauauuuauaua
((((((.(((((((.(((((..(((.(((((((((.((((((((((((((.((((((((((((((((((.((((((((((((.(.((((((((((((((((((((((((((((.(((((((((((((((.((((((.(((((((((((((((((((((((((.(((.((((..((......(((.....((...(((((((((((((((((.....(((((((...(((....(((((((((((((.......)))))))))))))....))).))))))).....)))))))))))))))))...)).....)))......))..)))).))).))))))))))))))))))))))))).))))))..))))))))))))))).)))))))))))))))))))))))))))).).)))))))))))).)))))))))))))))))).)))))))))))))).))))))))).)))..))))).))))))).))))))

Structure
      u       a     aa   u         c              a                  u            c a                            c               -a      c                         a   a    cu  uaauca   cacac  aau                 cuauu       aac   auaa             ua 
uauaua auauaug aaaaa  ugg auuagucca uagcuuauaugaac uaugagcccaacggucua auugaaucuggg c aucugacgaucacggauguccgguagug uugaauuuuauuuua  uuucua aaauucaaaucacuugaaauuuuag ugu uguu  uc      agg     cu   aaaaauauuaaaaaaua     cgugaaa   aaa    ccaaaauaccccc  a
|||||| ||||||| |||||  ||| ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||||||||||| ||| ||||  ||      |||     ||   |||||||||||||||||     |||||||   |||    |||||||||||||  a
auauau uauauac uuuuu  acu uaaucgggu aucgaguauacuug auacucggguugccggau uaacuuggaccc g uAGACUGCUAGUGUCUACAGGCCAUcac aacuuaaaauaaaau  aaagau uuuagguuuagugaacuuuaaaauu gca acaa  ag      ucc     ga   uuuuuauaguuuuuuau     guacuuu   uuu    gguuuuauggggg  u
      u       c     ag   c         a              g                  c            a c                            a               aa      u                         c   c    au  uuuuua   acuua  agu                 aaaau       --a   aacc             uu 


Annotation confidence Not enough data
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Genome context
scaffold00025: 4480840-4481337 [+]

Database links

Mature atr-miR8552b

Accession MIMAT0033854
Description Amborella trichopoda atr-miR8552b mature miRNA
Sequence 389 - UACCGGACAUCUGUGAUCGUCAGA - 412
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089