miRBase entry: atr-MIR8565e

Stem-loop atr-MIR8565e


Accession
MI0027452
Description
Amborella trichopoda atr-MIR8565e precursor miRNA


Sequence

5345 reads, 2579 reads per million, 4 experiments
augaauuuuuaguuucaguaauaauaauaaagaguaaugauccuaugagacccucccacacccauguauguaggaccccaaaggaucaccauuaaaUUUGGCACAGAUCUCUAGAAAAGUuaucacaugagugugggacuugacuuuucuagagaucugugccaaauuuaaugaugaucauuugggguccuacacacaugggugugagagggucucauaggaucauuacucaauaauaaauaaaagaaaaaagaagaugcau
.((((........))))..............((((((((((((((((((((((((.(((((((((((.((((((((((((((.(((((.((((((((((((((((((((((((((((((((((((((....)))))....))))))))))))))))))))))))))))))))).))))).)))))))))))))).))))))))))).))))))))))))))))))))))))...............................

Structure
augaauuuuuaguuucaguaauaauaauaaa                        c           a              g     c                                 ----     u 
                               gaguaaugauccuaugagacccuc cacacccaugu uguaggaccccaaa gauca cauuaaaUUUGGCACAGAUCUCUAGAAAAGUua    ucaca g
                               |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||    |||||  
                               cucauuacuaggauacucugggag guguggguaca acauccugggguuu cuagu guaauuuaaaccgugucuagagaucuuuucagu    ggugu a
uacguagaagaaaaaagaaaauaaauaauaa                        a           c              a     a                                 ucag     g 


Annotation confidence Not enough data
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Genome context
scaffold00159: 262391-262652 [+]

Database links

Mature atr-miR8565e

Accession MIMAT0033850
Description Amborella trichopoda atr-miR8565e mature miRNA
Sequence 97 - UUUGGCACAGAUCUCUAGAAAAGU - 120
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089