Stem-loop atr-MIR8565d

Accession

MI0027451

Description

Amborella trichopoda atr-MIR8565d precursor miRNA

Sequence

2017 reads, 785 reads per million, 4 experiments

gguuauuuaacuaaagaguaaugauccuaugagacccucccacacccauguguauaggaccccaaaggaucaccauuaaaUUUGGCACAGAUCUCUAGAAAAGUcaaaucuuacacccaugugauaauuuuucuagagaucugugccaaauuuaauagugauccuuugggauccuacacacauggguguggacgggucucauaggaucauuacucuuaacuaaaaacauaaagcuagcc
(((((((((....((((((((((((((((((((((((..((((((((((((((.(((((.(((((((((((((.((((((((((((((((((((((((((((((...(((..(((....)))))).)))))))))))))))))))))))))))))).))))))))))))).))))).))))))))))))))..))))))))))))))))))))))))...))))..........)))))

Structure

     ----------    acua                        uc              a     c             c                              caa   uu   c 
gguua          uuua    aagaguaaugauccuaugagaccc  ccacacccaugugu uagga cccaaaggaucac auuaaaUUUGGCACAGAUCUCUAGAAAAGU   auc  aca c
|||||          ||||    ||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||   |||  |||  
ccgau          aaau    uucucauuacuaggauacucuggg  gguguggguacaca auccu ggguuuccuagug uaauuuaaaccgugucuagagaucuuuuua   uag  ugu c
     cgaaauacaa    -caa                        ca              c     a             a                              --a   --   a 

Annotation confidence Not enough data

Genome context

scaffold00131: 971786-972024 [+]

Mature atr-miR8565d

• Accession: MIMAT0033849
• Description: Amborella trichopoda atr-miR8565d mature miRNA
• Sequence: 81 - UUUGGCACAGAUCUCUAGAAAAGU - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089