miRBase entry: atr-MIR8617

Stem-loop atr-MIR8617


Accession
MI0027435
Description
Amborella trichopoda atr-MIR8617 precursor miRNA


Sequence

1105 reads, 1046.0 reads per million, 2 experiments
gcguugguaaucauaaaaauuaguuaagggguggggucuauacaagguuguagcauuacuugcagaaguaagguugcgauguucuacauAGUUCAUUUUAGUUGGAUGGUGUagauuuaacacgucuuuuaagauagugucaaaaagugauacgccuuuuaagauagugcuaaauCUACACUGUUCAAAUAAAAUGAAUGauguagauuacugcaaucuuacuucuacaaguacgguugcaaccuuauauaaacuuuuuauuaguuaagaauaaaagcaaaaugauaaucuuuugu
.....(((.(((((.....((((((((.....(((((.((((.(((((((((((..((((((.(((((((((((((((.((.(((((((.((((((((((.((((((((((((((((((.((((((((..(((...((((((.....))))))..)))..))))).))).)))))))))))))))))).)))))))))).))))))).)).))))))))))))))).))))))..))))))))))).)))).)))))...)))))))).............))))).)))......

Structure
-gcguu   a     --------aaaaa        ggggu     c    c           au      c               a  u       A          G                  a   -     uu   aua      a 
      ggu aucau             uuaguuaa     ggggu uaua aagguuguagc  uacuug agaaguaagguugcg ug ucuacau GUUCAUUUUA UUGGAUGGUGUagauuua cac gucuu  aag   guguca a
      ||| |||||             ||||||||     ||||| |||| |||||||||||  |||||| ||||||||||||||| || ||||||| |||||||||| |||||||||||||||||| ||| |||||  |||   |||||| a
      cua uagua             aauugauu     uuuca auau uuccaacguug  augaac ucuucauucuaacgu au agaugua UAAGUAAAAU AACUUGUCACAUCuaaau gug uagaa  uuc   cauagu a
uguuuu   a     aaacgaaaauaag        --auu     a    a           gc      a               c  u       G          A                  c   a     uu   -cg      g 


Annotation confidence Medium
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Genome context
scaffold00018: 135389-135684 [-]

Database links

Mature atr-miR8617-5p

Accession MIMAT0033832
Description Amborella trichopoda atr-miR8617-5p mature miRNA
Sequence 90 - AGUUCAUUUUAGUUGGAUGGUGU - 112
Evidence experimental
Illumina [1]

Mature atr-miR8617-3p

Accession MIMAT0058636
Description Amborella trichopoda atr-miR8617-3p mature miRNA
Sequence 176 - CUACACUGUUCAAAUAAAAUGAAUG - 200
Evidence experimental
unknown

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089