Stem-loop pxy-mir-2b

Accession

MI0027399

Description

Plutella xylostella pxy-mir-2b precursor miRNA

Literature search

6 open access papers mention pxy-mir-2b
(7 sentences)

Sequence

8114 reads, 1251.0 reads per million, 31 experiments

ucucgugugccuuccaggacagagcgauguggccgcgCCGUCAAAGCCGGUUGAUCAUAggucauugcgcagcuaUCACAGCCAGCUUUGAUGAGCACggccgcauugccagccacccagcccacgccu
...((((.((......((.(.(.((((((((((((.(((((((((((.(((((...((((.(........).))))..))))).))))))))).)).))))))))))))).))).....)).))))...

Structure

ucu    u  cuucca  a a a            c  -         C     AUC    g cau 
   cgug gc      gg c g gcgauguggccg gC CGUCAAAGC GGUUG   AUAg u   u
   |||| ||      || | | |||||||||||| || ||||||||| |||||   |||| |    
   gcac cg      cc g c cguuacgccggC CG GUAGUUUCG CCGAC   Uauc a   g
ucc    c  -accca  - a -            A  A         A     -AC    g cgc 

Annotation confidence High

Genome context

scaffold_168: 4436-4564 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pxy-mir-2b

Mature pxy-miR-2b-5p

• Accession: MIMAT0058625
• Description: Plutella xylostella pxy-miR-2b-5p mature miRNA
• Sequence: 38 - CCGUCAAAGCCGGUUGAUCAUA - 59
• Evidence: experimental ; Illumina [1]

Mature pxy-miR-2b-3p

• Accession: MIMAT0033803
• Description: Plutella xylostella pxy-miR-2b-3p mature miRNA
• Sequence: 76 - UCACAGCCAGCUUUGAUGAGCAC - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787