Stem-loop pxy-mir-306-2

Accession

MI0027382

Description

Plutella xylostella pxy-mir-306-2 precursor miRNA

Literature search

2 open access papers mention pxy-mir-306-2
(8 sentences)

Sequence

33813 reads, 1955.0 reads per million, 31 experiments

uaacgcagguccauuCCAGGUACUAGGUGACUCUGAgugguugaauaucuCAGAGCUGUCUGGUGCCUCAacauggaucucggua
...((.((((((((...((((((((((.(.(((((((...........))))))))..))))))))))....))))))))))...

Structure

uaa  c        -uCC          -U A       uggu 
   cg agguccau    AGGUACUAGG  G CUCUGAg    u
   || ||||||||    ||||||||||  | |||||||    g
   gc ucuaggua    UCCGUGGUCU  C GAGACuc    a
aug  -        caAC          GU -       uaua 

Annotation confidence High

Genome context

scaffold_287: 24523-24607 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pxy-mir-306-2

Mature pxy-miR-306-5p

• Accession: MIMAT0033787
• Description: Plutella xylostella pxy-miR-306-5p mature miRNA
• Sequence: 16 - CCAGGUACUAGGUGACUCUGA - 36
• Evidence: experimental ; Illumina [1]

Mature pxy-miR-306-2-3p

• Accession: MIMAT0061505
• Description: Plutella xylostella pxy-miR-306-2-3p mature miRNA
• Sequence: 51 - CAGAGCUGUCUGGUGCCUCA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787