Stem-loop pxy-mir-6497

Accession

MI0027355

Description

Plutella xylostella pxy-mir-6497 precursor miRNA

Literature search

0 open access papers mention pxy-mir-6497
(0 sentences)

Sequence

16832966 reads, 770357.0 reads per million, 31 experiments

cuucggaauaaggauuggcucugaggaccggggcgugucGGGUUUGGAGGGGAAGCGGAUgcggccggugccgggccuggucgaugcccguucacgcgggCGGACUCUGGGCCCGCGCUCCGGCguuccgcggauccuccuagccguaaggccgugucgguuucgucucgugc
(((((((............)))))))(((((.(((.(((.((((.((((((...(((((.(((.((((.(((((((((((....(((((((....)))))))....))))))))).)).))))))))))))...)))))).))))....)))))).)))))............

Structure

cuucggaauaaggauuggcucugagg     g   u   ---G    U      GAA     U   g    u  -         ucga       u 
                          accgg gcg guc    GGUU GGAGGG   GCGGA gcg ccgg gc cgggccugg    ugcccgu c
                          ||||| ||| |||    |||| ||||||   ||||| ||| |||| || |||||||||    |||||||  
                          uggcu ugc cgg    ccga ccuccu   cgccu ugC GGCC CG GCCCGGGUC    GCgggcg a
--------------cgugcucugcuu     g   -   aaug    u      agg     -   -    U  C         UCAG       c 

Annotation confidence Low

Genome context

scaffold_625: 83913-84085 [-]

Mature pxy-miR-6497-5p

• Accession: MIMAT0033761
• Description: Plutella xylostella pxy-miR-6497-5p mature miRNA
• Sequence: 40 - GGGUUUGGAGGGGAAGCGGAU - 60
• Evidence: experimental ; Illumina [1]

Mature pxy-miR-6497-3p

• Accession: MIMAT0058615
• Description: Plutella xylostella pxy-miR-6497-3p mature miRNA
• Sequence: 101 - CGGACUCUGGGCCCGCGCUCCGGC - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787