Stem-loop sma-mir-8479

Accession

MI0027281

Description

Schistosoma mansoni sma-mir-8479 precursor miRNA

Sequence

uaauggcauuuagcucuacuuaggaauagccagcuggauuuaucuggauCCCAGUGUUGAUAUUCAUUUUgggacaugaaagauugaugaugcuucgguccgUGAUAUCGAAUAUGGGAUAauucgaaucauuucagugagauccuaaauaaaguauguauuuu
.....((((...(((.((.((((((.......(((((((((......((((((...(((((((.(((....((((.((((..(((...)))..))))))))))))))))))...)))))).....)))))....))))....)))))).)).))))))).....

Structure

uaaug    uua   c  c      auagcca    ----     aucugg      GUG       U   UUUg    a    ag   g 
     gcau   gcu ua uuagga       gcug    gauuu      auCCCA   UUGAUAU CAU    ggac ugaa  auu  
     ||||   ||| || ||||||       ||||    |||||      ||||||   ||||||| |||    |||| ||||  ||| a
     ugua   uga au aauccu       ugac    cuaag      UAGGGU   AGCUAUA GUg    ccug gcuu  uag  
uuuua    ---   a  a      ---agag    uuua     -cuuaA      AUA       -   ----    -    cg   u 

Annotation confidence Not enough data

Genome context

SC_0151: 324307-324470 [-]

Mature sma-miR-8479-5p

• Accession: MIMAT0033679
• Description: Schistosoma mansoni sma-miR-8479-5p mature miRNA
• Sequence: 50 - CCCAGUGUUGAUAUUCAUUUU - 70
• Evidence: experimental ; SOLiD [1]

Mature sma-miR-8479-3p

• Accession: MIMAT0033680
• Description: Schistosoma mansoni sma-miR-8479-3p mature miRNA
• Sequence: 103 - UGAUAUCGAAUAUGGGAUA - 121
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402