Stem-loop sma-mir-8478

Accession

MI0027280

Description

Schistosoma mansoni sma-mir-8478 precursor miRNA

Sequence

uuucauugaugauauguacaaAAAGGGUUAUAUUAUUCCAuuuuauuaauccauaggauugaccggcuauuugguuuguguuaauagaauAAGGAUAACUUACGCCUGUUaccccucgucgaggagc
.(((.(((((((...(((.....(((..((..((((((.(((((((((((.((.......(((((......))))))).)))))))))))..))))))..))..)))..)))...))))))).))).

Structure

u   a       uau   caaAA   GU  UA      -C           c  uaggauu     gc 
 uuc uugauga   gua     AGG  UA  UUAUUC  Auuuuauuaau ca       gaccg  u
 ||| |||||||   |||     |||  ||  ||||||  ||||||||||| ||       |||||   
 gag agcugcu   caU     UCC  AU  AAUAGG  uaagauaauug gu       uuggu  a
c   g       ccc   ---UG   GC  UC      AA           u  -------     uu 

Annotation confidence Not enough data

Genome context

SC_0150: 629079-629205 [-]

Mature sma-miR-8478-5p

• Accession: MIMAT0033677
• Description: Schistosoma mansoni sma-miR-8478-5p mature miRNA
• Sequence: 22 - AAAGGGUUAUAUUAUUCCA - 40
• Evidence: experimental ; SOLiD [1]

Mature sma-miR-8478-3p

• Accession: MIMAT0033678
• Description: Schistosoma mansoni sma-miR-8478-3p mature miRNA
• Sequence: 91 - AAGGAUAACUUACGCCUGUU - 110
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402