Stem-loop sma-mir-124b

Accession

MI0027250

Description

Schistosoma mansoni sma-mir-124b precursor miRNA

Literature search

4 open access papers mention sma-mir-124b
(10 sentences)

Sequence

gaagcuauagugaugauuaaagcuccguggaugaCAUUCACCGCGUGCCUUAAuauuuuuguuaugaauaauauuuauaacucAUCAAGGCAAUCGCGGAAAAuggcauacaaaacggacuuuauaauguuuacuuauaaugau
.....((((((((....(((((.(((((..(((.((((..(((((((((((.........(((((((((...))))))))).....))))))..)))))..)))).))).....))))))))))......)))).)))).....

Structure

gaagc    -    --ugau     c     ---gg   a    CA     --      AAuauuuuu         a 
     uaua guga      uaaag uccgu     aug CAUU  CCGCG  UGCCUU         guuaugaau  
     |||| ||||      ||||| |||||     ||| ||||  |||||  ||||||         ||||||||| a
     auau cauu      auuuc aggca     uac guAA  GGCGC  ACGGAA         caauauuua  
uagua    u    uguaau     -     aaaca   g    AA     UA      ----CUAcu         u 

Annotation confidence Not enough data

Genome context

Chr_6: 18429504-18429647 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sma-mir-124b

Mature sma-miR-124b-5p

• Accession: MIMAT0033618
• Description: Schistosoma mansoni sma-miR-124b-5p mature miRNA
• Sequence: 35 - CAUUCACCGCGUGCCUUAA - 53
• Evidence: experimental ; SOLiD [1]

Mature sma-miR-124b-3p

• Accession: MIMAT0033619
• Description: Schistosoma mansoni sma-miR-124b-3p mature miRNA
• Sequence: 84 - AUCAAGGCAAUCGCGGAAAA - 103
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402