Stem-loop sma-mir-281

Accession

MI0027237

Description

Schistosoma mansoni sma-mir-281 precursor miRNA

Literature search

2 open access papers mention sma-mir-281
(4 sentences)

Sequence

acuaacauauuagauaauguguuauugaauuaguucugaugGAGAGAGCACUUUUAUGACGGAaauaaugaaaaucuucgaauuuuauugaaguuccauaaUGUCAUGGAGUUGCUCUCUAUAucagguuaguccaagcaucauaaucuauguggauaa
.....(((((.((((.((((((..(((.((((..(((((((.((((((((.(((((((((((((.((((((((.((...)).))))))))...)))).....))))))))).)))))))).))))))).)))).)))))).))).))))))))).....

Structure

acuaa     u    a   -   ua   a    gu       G        C         -----    --a        a  u 
     cauau agau aug ugu  uug auua  ucugaug AGAGAGCA UUUUAUGAC     GGAa   uaaugaaa uc  
     ||||| |||| ||| |||  ||| ||||  ||||||| |||||||| |||||||||     ||||   |||||||| || u
     gugua ucua uac acg  aac ugau  ggacuAU UCUCUCGU GAGGUACUG     ccuu   guuauuuu ag  
aauag     -    a   u   --   c    -u       A        U         Uaaua    gaa        a  c 

Annotation confidence Not enough data

Genome context

Chr_4: 27195906-27196064 [-]

Mature sma-miR-281-5p

• Accession: MIMAT0033592
• Description: Schistosoma mansoni sma-miR-281-5p mature miRNA
• Sequence: 42 - GAGAGAGCACUUUUAUGACGGA - 63
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature sma-miR-281-3p

• Accession: MIMAT0033593
• Description: Schistosoma mansoni sma-miR-281-3p mature miRNA
• Sequence: 102 - UGUCAUGGAGUUGCUCUCUAUA - 123
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402