Stem-loop sma-mir-36b

Accession

MI0027198

Description

Schistosoma mansoni sma-mir-36b precursor miRNA

Literature search

3 open access papers mention sma-mir-36b
(4 sentences)

Sequence

auaaaagcagcaucugaAGGGAAUGUCUGUUCGGUUUGUgucaucgugguuacuuguuagguacuacuuaauaauguaacuauuuuucaguacaCCACCGGGUAGACAUUCAUCCGCagaugucuugcuguaaa
.....(((((((((((..(((((((((((((((((..(((((...(((((((((((((((((...))))))))).))))))))......).)))).))))))))))))))).))..)))))))..)))).....

Structure

auaaa    --       aA  -               UU    - ---auc        -         a 
     agca  gcaucug  GG GAAUGUCUGUUCGGU  GUgu c      gugguuac uuguuaggu  
     ||||  |||||||  || |||||||||||||||  |||| |      |||||||| ||||||||| c
     ucgu  uguagaC  CU CUUACAGAUGGGCCA  Caca g      uaucaaug aauaauuca  
aaaug    uc       GC  A               -C    u acuuuu        u         u 

Annotation confidence Not enough data

Genome context

Chr_1: 57514904-57515037 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sma-mir-36b

Mature sma-miR-36b-5p

• Accession: MIMAT0033514
• Description: Schistosoma mansoni sma-miR-36b-5p mature miRNA
• Sequence: 18 - AGGGAAUGUCUGUUCGGUUUGU - 39
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature sma-miR-36b-3p

• Accession: MIMAT0033515
• Description: Schistosoma mansoni sma-miR-36b-3p mature miRNA
• Sequence: 95 - CCACCGGGUAGACAUUCAUCCGC - 117
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402