Stem-loop sma-mir-125c

Accession

MI0027196

Description

Schistosoma mansoni sma-mir-125c precursor miRNA

Literature search

3 open access papers mention sma-mir-125c
(5 sentences)

Sequence

cuugcguugcauuguauuccguaUCCCUGAGACCUUAGAGUUGUCcuguuuugaauuauuuucgauuauuauaaaaaagauugaCACCUCUACGGUAUCAGGUCACGgaauaaugcuaaacaacau
.(((....(((((((..(((((...(((((.(((.(((((.((((..(((((...((((...........))))..))))).)))).))))).))).)))))..))))))))))))....)))...

Structure

--c   cguu       au     aUC     G   U     U    cu     gaa    uuuc 
   uug    gcauugu  uccgu   CCUGA ACC UAGAG UGUC  guuuu   uuau    g
   |||    |||||||  |||||   ||||| ||| ||||| ||||  |||||   ||||    a
   aac    cguaaua  agGCA   GGACU UGG AUCUC ACag  uagaa   aaua    u
uac   aaau       --     -CU     A   C     C    -u     -aa    uuau 

Annotation confidence Not enough data

Genome context

Chr_1: 34097074-34097199 [-]

Mature sma-miR-125c-5p

• Accession: MIMAT0033510
• Description: Schistosoma mansoni sma-miR-125c-5p mature miRNA
• Sequence: 24 - UCCCUGAGACCUUAGAGUUGUC - 45
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature sma-miR-125c-3p

• Accession: MIMAT0033511
• Description: Schistosoma mansoni sma-miR-125c-3p mature miRNA
• Sequence: 85 - CACCUCUACGGUAUCAGGUCACG - 107
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402