Stem-loop str-mir-7880x

Accession

MI0027173

Description

Strongyloides ratti str-mir-7880x precursor miRNA

Sequence

UGGCCUGGAUUCGGUCGCAAAGAcauuaucuaauguguaUUUGCUGAUCGAUCCAACCAUG
(((..(((((.((((((((((.((((........)))).))))).)))))))))).)))..

Structure

--   CC     U     -     G    uau 
  UGG  UGGAU CGGUC GCAAA Acau   c
  |||  ||||| ||||| ||||| ||||    
  ACC  ACCUA GCUAG CGUUU ugug   u
GU   -A     -     U     a    uaa 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_ChrX: 2081545-2081605 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from str-mir-7880x

Mature str-miR-7880x-5p

• Accession: MIMAT0033478
• Description: Strongyloides ratti str-miR-7880x-5p mature miRNA
• Sequence: 1 - UGGCCUGGAUUCGGUCGCAAAGA - 23
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880x-3p

• Accession: MIMAT0033479
• Description: Strongyloides ratti str-miR-7880x-3p mature miRNA
• Sequence: 40 - UUUGCUGAUCGAUCCAACCAUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260