Stem-loop str-mir-8393

Accession

MI0027163

Description

Strongyloides ratti str-mir-8393 precursor miRNA

Sequence

AGCAUUUGAAUCAUCGAUGAUUaaucaaaugaguuacUCACCGGGAUAUCAGAUGCUC
((((((((((((.(((.(((.((((.......)))).))).)))))).))))))))).

Structure

-         -   A   A   U    ca 
 AGCAUUUGA AUC UCG UGA Uaau  a
 ||||||||| ||| ||| ||| ||||  a
 UCGUAGACU UAG GGC ACU auug  u
C         A   -   C   c    ag 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr02: 3569872-3569929 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from str-mir-8393

Mature str-miR-8393-5p

• Accession: MIMAT0033458
• Description: Strongyloides ratti str-miR-8393-5p mature miRNA
• Sequence: 1 - AGCAUUUGAAUCAUCGAUGAUU - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-8393-3p

• Accession: MIMAT0033459
• Description: Strongyloides ratti str-miR-8393-3p mature miRNA
• Sequence: 38 - UCACCGGGAUAUCAGAUGCUC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260