Stem-loop str-mir-8380

Accession

MI0027142

Description

Strongyloides ratti str-mir-8380 precursor miRNA

Sequence

UGGGUAUGUUUUUCGUCCAAGAuauauuugauaaaaaucUUGCACGAUUUACAUACUCACA
(((((((((...((((.((((((.............)))))).))))...)))))))))..

Structure

--         UUU    C      auauu 
  UGGGUAUGU   UCGU CAAGAu     u
  |||||||||   |||| ||||||     g
  ACUCAUACA   AGCA GUUcua     a
AC         UUU    C      aaaau 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_ChrX: 2084437-2084497 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from str-mir-8380

Mature str-miR-8380-5p

• Accession: MIMAT0033416
• Description: Strongyloides ratti str-miR-8380-5p mature miRNA
• Sequence: 1 - UGGGUAUGUUUUUCGUCCAAGA - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-8380-3p

• Accession: MIMAT0033417
• Description: Strongyloides ratti str-miR-8380-3p mature miRNA
• Sequence: 40 - UUGCACGAUUUACAUACUCACA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260