Stem-loop str-mir-7880u

Accession

MI0027137

Description

Strongyloides ratti str-mir-7880u precursor miRNA

Sequence

UGCCCCAGUAAGGCCACAAAUuuaguuuuauaguuuaaUUUGCGACCAUUCCAGGGCUA
.((((..(...((.(.((((((..............)))))).).))...)..))))..

Structure

-U    CA UAA  C A      uaguuu 
  GCCC  G   GG C CAAAUu      u
  ||||  |   || | ||||||       
  CGGG  C   CC G GUUUaa      a
AU    AC UUA  A C      uuugau 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 396451-396509 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880u

Mature str-miR-7880u-5p

• Accession: MIMAT0033406
• Description: Strongyloides ratti str-miR-7880u-5p mature miRNA
• Sequence: 1 - UGCCCCAGUAAGGCCACAAAU - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880u-3p

• Accession: MIMAT0033407
• Description: Strongyloides ratti str-miR-7880u-3p mature miRNA
• Sequence: 39 - UUUGCGACCAUUCCAGGGCUA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260